YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	S47A1_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	35	0.92
Transmembrane Helix	36	58	0.85
Non-Cytoplasmic	59	71	0.70
Transmembrane Helix	72	93	0.88
Cytoplasmic	94	112	0.84
Transmembrane Helix	113	134	0.93
Non-Cytoplasmic	135	151	0.89
Transmembrane Helix	152	172	0.91
Cytoplasmic	173	181	0.75
Transmembrane Helix	182	205	0.85
Non-Cytoplasmic	206	214	0.77
Transmembrane Helix	215	236	0.93
Cytoplasmic	237	255	0.92
Transmembrane Helix	256	276	0.92
Non-Cytoplasmic	277	295	0.90
Transmembrane Helix	296	319	0.85
Cytoplasmic	320	335	0.90
Transmembrane Helix	336	356	0.92
Non-Cytoplasmic	357	376	0.77
Transmembrane Helix	377	398	0.85
Cytoplasmic	399	407	0.79
Transmembrane Helix	408	429	0.90
Non-Cytoplasmic	430	434	0.77
Transmembrane Helix	435	457	0.91
Cytoplasmic	458	542	0.97
Transmembrane Helix	543	563	0.93
Non-Cytoplasmic	564	566	0.91

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEVLEEPAPG PGGADAAERR GLRRLLLSGF QEELRALLVL AGPAFLAQLM MFLISFISSV  60
   61 FCGHLGKLEL DAVTLAIAVI NVTGISVGHG LSSACDTLIS QTYGSQNLKH VGVILQRGTL 120
  121 ILLLCCFPCW ALFINTEQIL LLFRQDPDVS RLTQTYVMVF IPALPAAFLY TLQVKYLLNQ 180
  181 GIVLPQVITG IAANLVNALA NYLFLHQLHL GVMGSALANT ISQFALAIFL FLYILWRKLH 240
  241 HATWGGWSWE CLQDWASFLQ LAIPSMLMLC IEWWAYEVGS FLSGILGMVE LGAQSITYEL 300
  301 AIIVYMIPAG FSVAANVRVG NALGAGNIDQ AKKSSAISLI VTELFAVTFC VLLLGCKDLV 360
  361 GYIFTTDWDI VALVAQVVPI YAVSHLFEAL ACTCGGVLRG TGNQKVGAIV NAIGYYVIGL 420
  421 PIGISLMFVA KLGVIGLWSG IIICSVCQTS CFLVFIARLN WKLACQQAQV HANLKVNVAL 480
  481 NSAVSQEPAH PVGPESHGEI MMTDLEKKDE IQLDQQMNQQ QALPVHPKDS NKLSGKQLAL 540
  541 RRGLLFLGVV LVLVGGILVR VYIRTE