YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	NTCP4_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.32
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	103	0.54
Transmembrane Helix	104	126	0.85
Cytoplasmic	127	136	0.62
Transmembrane Helix	137	160	0.91
Non-Cytoplasmic	161	165	0.65
Transmembrane Helix	166	188	0.87
Cytoplasmic	189	197	0.56
Transmembrane Helix	198	220	0.92
Non-Cytoplasmic	221	230	0.61
Transmembrane Helix	231	254	0.89
Cytoplasmic	255	263	0.63
Transmembrane Helix	264	288	0.85
Non-Cytoplasmic	289	296	0.55
Transmembrane Helix	297	320	0.83
Cytoplasmic	321	337	0.55
Transmembrane Helix	338	352	0.32
Non-Cytoplasmic	353	362	0.50
Transmembrane Helix	363	385	0.75
Cytoplasmic	386	437	0.75

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDGLDNTTRL LAPSSLLPDN LTLSPNASST SASTLSPLPV TSSPSPGLSL APTPSIGFSP  60
   61 DLTPTPEPTS SSLAGGVAGQ DSSTFPRPWI PHEPPFWDTP LNHGLNVFVG AALCITMLGL 120
  121 GCTVDVNHFG AHVRRPVGAL LAALCQFGFL PLLAFLLALA FKLDEVAAVA VLLCGCCPGG 180
  181 NLSNLMSLLV DGDMNLSIIM TISSTLLALV LMPLCLWIYS RAWINTPLVQ LLPLGAVTLT 240
  241 LCSTLIPIGL GVFIRYKYNR VADYIVKVSL CSLLVTLVVL FIMTGTMLGP ELLASIPAAV 300
  301 YVVAIFMPLA GYASGYGLAT LFHLPPNCKR TVCLETGSQN VQLCTAILKL AFPPRFIGSM 360
  361 YMFPLLYALF QSAEAGVFVL IYKMYGSEIL HKREALDEDD DTDISYKKLK EEELADTSYG 420
  421 TVGTDDLVLM ETTQTSL