YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|62078785, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.97
Topology Confidence:	0.33
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADKQISLPA KLINGGIAGL IGVTCVFPID LAKTRLQNQQ NGQRMYASMS DCLIKTIRSE  60
   61 GYFGMYRGAA VNLTLVTPEK AIKLAANDFF RHQLSKDGQK LTLPKEMLAG CGAGTCQVIV 120
  121 TTPMEMLKIQ LQDAGRIGCV AGSAAAVAVN PCDVVKTRLQ SLERGVNEDT YSGFLDCARK 180
  181 IWRHEGPSAF LKGAYCRALV IAPLFGIAQV VYFLGIAESL LGLLQEPQA

Type	Start	End	Confidence
Non-Cytoplasmic	1	11	0.33
Transmembrane Helix	12	31	0.64
Cytoplasmic	32	192	0.63
Transmembrane Helix	193	216	0.63
Non-Cytoplasmic	217	229	0.84