YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|61556857, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.39
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	12	0.94
Transmembrane Helix	13	36	0.88
Non-Cytoplasmic	37	57	0.94
Transmembrane Helix	58	81	0.88
Cytoplasmic	82	99	0.95
Transmembrane Helix	100	121	0.93
Non-Cytoplasmic	122	129	0.67
Transmembrane Helix	130	150	0.91
Cytoplasmic	151	190	0.92
Transmembrane Helix	191	210	0.68
Non-Cytoplasmic	211	219	0.57
Transmembrane Helix	220	240	0.75
Cytoplasmic	241	249	0.75
Transmembrane Helix	250	270	0.85
Non-Cytoplasmic	271	284	0.66
Transmembrane Helix	285	304	0.92
Cytoplasmic	305	324	0.76
Transmembrane Helix	325	344	0.39
Non-Cytoplasmic	345	354	0.50
Transmembrane Helix	355	379	0.78
Cytoplasmic	380	418	0.59

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASREASQAP LEFGGPLGVT AMLILLPATM FHLLLAARSG PARLLALPAY LPGLEELWSP  60
   61 RALLLLFIWL GLQVALYLLP ARKVAEGLEL KDKSRLRYPI NGFQALVLTA LLVGLGVSVG 120
  121 LPLGALPGML LPLAFATTLT SFIFSLLLYA KALVAPASAL APGGNSGNSV YDFFLGRELN 180
  181 PRLGSFDFKY FCELRPGLIG WVFINLALLM QEAELRGSPS LAMWLVNGFQ LLYVGDALWY 240
  241 EESVLTTMDI IHDGFGFMLV FGDLAWVPFT YSLQAQFLLY HPQPLGLPMA LLICLIKAVG 300
  301 YYIFRGANSQ KNTFRKNPSD PSVAGLETIP TATGRQLLVS GWWGMVRHPN YLGDLIMALA 360
  361 WSLPCGLSHL LPYFYLLYFT ALLVHREARD EQQCLRKYGR AWQEYCKRVP YRIIPYVY