YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CRCM1_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHPEPAPPPN NSNPELPLSG GSSTSGSRRS RRRSGDGEPT GAPPLPPPPA VSYPDWIGQS  60
   61 YSEVMSLNEH SMQALSWRKL YLSRAKLKAS SRTSALLSGF AMVAMVEVQL DTDHDYPPGL 120
  121 LIVFSACTTV LVAVHLFALM ISTCILPNIE AVSNVHNLNS VKESPHERMH RHIELAWAFS 180
  181 TVIGTLLFLA EVVLLCWVKF LPLKRQAGQP SPTKPPTEPA VVVANSSNNG GITPGEAAAI 240
  241 ASTAIMVPCG LVFIVFAVHF YRSLVSHKTD RQFQELNELA EFARLQDQLD HRGDHSLTPG 300
  301 THYA

Type	Start	End	Confidence
Cytoplasmic	1	88	0.99
Transmembrane Helix	89	110	0.86
Non-Cytoplasmic	111	118	0.85
Transmembrane Helix	119	139	0.92
Cytoplasmic	140	174	0.91
Transmembrane Helix	175	198	0.89
Non-Cytoplasmic	199	236	0.96
Transmembrane Helix	237	261	0.90
Cytoplasmic	262	304	0.99