YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SYNE4_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.53
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAQFPLLGHG FPPEPVNHPL GGPRGLDVAG PTICPAPEEE PSRPEQVQAS LDAPEHFMDE  60
   61 PKSTESATSP SKLPLASSHE HQDGGKPCEA LQAELQGAAE RVDALLVFGE GLAERSEPRA 120
  121 WTSLEQVLRA LGTHRDTIFQ RLWQLQAQLI SYSLVLEKAN LLDQDLEVEG DSDGPAAGGV 180
  181 WGPWAPSIFP TPAELEWDPA GDVGGLGPSG QKISRIPGAP CELCGYRGSQ SSGQGFEDLL 240
  241 SLGLGHRKHL AAHHRRRLQK PQDKKRQGPP SLPDAMLEVD RGVPAPASRR PLTFLLLLLF 300
  301 LLLVGATLLL PLSGVPCCSH TRLARTPYLV LSYVNGLPPI

Type	Start	End	Confidence
Non-Cytoplasmic	1	291	0.58
Transmembrane Helix	292	315	0.87
Cytoplasmic	316	340	0.53