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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: LPPRC_RAT
Protein type: Globular with Signal Peptide
Type Confidence: 0.91
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSALLRPARW LLGAAAVPRL PLSLRLPAGG PGRLPSVVRV AAAGGRPAAG ELLSQARLYA  60
   61 IVAEKKDLPE EPAPVRRSGS QFDWALMRLD NSVRRTGRIT KGLLQKVFES TCRSGSPGSN 120
  121 QALLLLRSCG SLLPELSLAE RTEFAHKIWD KLQQLGTVYD VSHYNALLKV YLQNEYRFSP 180
  181 TDFLAKMEGA NIQPNRVTYQ RLIAAYCSVG DIEGASKILG FMKTRDLPIT EAVFSALVTG 240
  241 HARAGDMESA ENILTVMKQA GIEPGPDTYL ALLNAHAEKG DIDHVKQILE KVEKSDHYFM 300
  301 DRDFLQIIVS FSKAGYPQYV SEILEKITYE RRSIPDAMNL ILLLVTEKLE DTAFQVLLAL 360
  361 PLARDETSSS FGSFFLRHCV TMDTPAEKLI DYCKRLRDAK VHSSSLQFTL HCALQANKTA 420
  421 LAKAVMEALR DEGFPIRTHY FWPLLVGHQK TKNVQGIIDI LKIMKEMGVD PDQETYINYV 480
  481 FPCFGSVQSA RAALQENKCL PKSTTFAQAE VRNEAINGNL QNILSFLESN ALPFSFNSLR 540
  541 GSLILGFRRS MNIDLWSKIT ELLYKDDRYC QKPPGPTEAV GYFLYNLIDS MSDSEVQAKE 600
  601 ERLRQYFHQL REMNVKVSEN IYKGICNLLD NYHVPELIKD VKVLVDREKI DSRKTSQFTS 660
  661 SDLESTLEKL KAEGHPVGDP LKQLILLLCS EENMQKALEV KAKYESDMVI GGYAALINLC 720
  721 CRHDNAEDAL NLKQEFDRLD PSAVLDTAKY VALVKVLGKH GRVQDAINIL KEMKEKDVVI 780
  781 KDAAVLSFFH ILNGAALRGE IETVKQLHEA IVTLGLAKPS SNISFPLVTV HLEKDDLPAA 840
  841 LEASIACHEK YKVLPRIHDV LCKLIEKGET DLIQKAMDFV SQEQGEMSML YDLFFAFLQT 900
  901 GNYKEAKKII ETPGIRARPT RLQWFCDRCI ANNQVETLEK LVELTEKLFE CDRDQMYYNL 960
  961 LKLYKISGDW QRADAVWNKM QEENLIPRER TLRLLAGILK TSNQEVPFDV PELWFGDDRS1020
 1021 SLSSSSPSAG DTVTEKMLLS DCRLKKSKDA YNIFLKAEKQ DVVFSSEAYS TLVGLLLSKD1080
 1081 DFTRAMHVKD FAETHIKGFT LNGAASSLLI IAQVRRDYLK VALETLKAAL DLEQVPSELA1140
 1141 VTRLIQALAL QGDVKSIETI QKMVKGLDAI ELSRMVFINN IALAQMKNNE IDAAIENIEH1200
 1201 MLASENQTVE HQYFGLSYLF RKVIEEQMEP ALEKLSIMSE RLANQFALYK PVTDLFLQLV1260
 1261 DSGKVDEARA LLERCGAIAE QTSILSVFCL RTSQKPKKAP VLKTLLELIP ELRENDRVYS1320
 1321 CSMKSYVADK DVASAKALYE HLTAKNMKLD DLFLKRYASL LKDVGEPVPF TEPPESFGFY1380
 1381 IKQLKEAREN PS

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle