YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|57527612, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.76
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	36	0.97
Transmembrane Helix	37	58	0.83
Non-Cytoplasmic	59	108	0.90
Transmembrane Helix	109	129	0.84
Cytoplasmic	130	136	0.78
Transmembrane Helix	137	157	0.92
Non-Cytoplasmic	158	163	0.71
Transmembrane Helix	164	186	0.82
Cytoplasmic	187	198	0.82
Transmembrane Helix	199	221	0.90
Non-Cytoplasmic	222	227	0.78
Transmembrane Helix	228	248	0.95
Cytoplasmic	249	282	0.94
Transmembrane Helix	283	305	0.76
Non-Cytoplasmic	306	331	0.83
Transmembrane Helix	332	352	0.90
Cytoplasmic	353	365	0.82
Transmembrane Helix	366	385	0.95
Non-Cytoplasmic	386	390	0.73
Transmembrane Helix	391	412	0.79
Cytoplasmic	413	420	0.65
Transmembrane Helix	421	444	0.87
Non-Cytoplasmic	445	455	0.74
Transmembrane Helix	456	478	0.91
Cytoplasmic	479	495	0.78

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRPLLRGPAG NDDEESSDST PLLPSARQIE AAPACCSARY NLALLAFCGF FVLYALRVNL  60
   61 SVALVDMVDS NSTLTDNRTS KECAEHSAPV KVHHNHTGKK YQWDAETQGW ILGSFFYGYI 120
  121 VTQIPGGYMA SRIGGKLLLG LGILGTAVFT LFTPLAADLG VVALIVLRAL EGLGEGVTFP 180
  181 AMHAMWSSWA PPLERSKLLT ISYAGAQLGT VISLPLSGII CYYMNWTYVF YLFGLVGIVW 240
  241 FILWMWIVSD TPETHKTISH YEKEYIVSSL KNQLSSQKVV PWVSILKSLP LWAIVVAHFS 300
  301 YNWTFYTLLT LLPTYMKEIL RFNVQENGFL SALPYFGCWL CMIVCGQAAD YLRVKWNFST 360
  361 ISVRRIFSLI GMVGPAVFLV AAGFIGCDYS LAVAFLTIST TLGGFASSGF SINHLDIAPS 420
  421 YAGILLGITN TFATIPGMIG PIIAKSLTPD NTIKEWQTVF CIAAAINVFG AIFFTLFAKG 480
  481 EVQNWALSDH HGHGN