YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	NADC_RAT
Protein type:	Globular with Signal Peptide
Type Confidence:	0.65
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDPEGLQFLL PPASLAALAN SWLQEDCPGL NFASLVTGSA PAQAVLWAKS PGVLAGRPFF  60
   61 DAIFTQLNCQ VSWLLPEGSK LVPVVKVAEV RGPAHHLLLG ERVALNTLAR CSGIASAAAT 120
  121 AVEVATSTGW AGHVAGTRKT TPGFRLVEKY GLLVGGAECH RYDLGGLVMV KDNHVVAAGS 180
  181 MEKAVLKARQ AAGFPLKVEV ECSSLKEALQ AAEAGADLVM LDNFKPEELH PTAATLKAKF 240
  241 PNVSVEASGG VTLDNLPQFC GTNIDVISLG MLTQAAPALD FSLKLYAEGD IPVPHARRS

Type	Start	End	Confidence
Signal Peptide	1	19	0.64
N-region	1	10
H-region	11	16
C-region	17	19
Cleavage Site	19	20
Non-Cytoplasmic	20	299	0.98