YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SYNG1_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDGIVEQKSV LVHSKIGDAG KRNGLINTRN FMAESRDGLV SVYPAPQYQS HRLVASAAPG  60
   61 SLEGGRSDPV QQLLDPNTLQ QSVDSHYRPN IILYSDGVLR SWGDGVATDC CETTFIEDRS 120
  121 PTKDSLEYPD GKFIDLSGDD IKIHTLSYDV EEEEELQELE SDYSSDTESE DNFLMMPPRD 180
  181 HLGLSVFSML CCFWPLGIAA FYLSHETNKA VAKGDFHQAS TSSRRALFLA VLSITIGTGI 240
  241 YVGVAVALIA YLSKNNHL

Type	Start	End	Confidence
Cytoplasmic	1	181	0.59
Transmembrane Helix	182	204	0.89
Non-Cytoplasmic	205	225	0.56
Transmembrane Helix	226	252	0.88
Cytoplasmic	253	258	0.56