YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	TSN12_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAREDSVKCL RCLLYALNLL FWLMSISVLA VSAWMRDYLN NVLTLTAETR VEEAVILTYF  60
   61 PVVHPVMIAV CCFLIIVGML GYCGTVKRNL LLLAWYFGTL LVIFCVELAC GVWTYEQEVM 120
  121 VPVQWSDMVT LKARMTNYGL PRYRWLTHAW NYFQREFKCC GVVYFTDWLE MTEMDWPPDS 180
  181 CCVREFPGCS KQAHQEDLSD LYQEGCGKKM YSFLRGTKQL QVLRFLGISI GVTQILAMIL 240
  241 TITLLWALYY DRREPGTDQM LSLKNDASQH LSCHSVELLK PSLSRIFEHT SMANSFNTHF 300
  301 EMEEL

Type	Start	End	Confidence
Cytoplasmic	1	11	0.95
Transmembrane Helix	12	34	0.91
Non-Cytoplasmic	35	62	0.94
Transmembrane Helix	63	84	0.92
Cytoplasmic	85	92	0.82
Transmembrane Helix	93	115	0.93
Non-Cytoplasmic	116	225	0.95
Transmembrane Helix	226	250	0.85
Cytoplasmic	251	305	0.94