YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|58475749, gi\|...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.98
Topology Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MARAAVLPPS RLSPTLPLLP LLLLLLQETG AQDVRVRVLP EVRGRLGGTV ELPCHLLPPT  60
   61 TERVSQVTWQ RLDGTVVAAF HPSFGVDFPN SQFNKDRLSF VRAKQEANAD LRDATLAFRG 120
  121 LRVEDEGNYT CEFATFPNGT RRGVTWLRVI AQPENHAEAQ EVTIGPQSVA VARCISTGGR 180
  181 PPARITWISS LGGEARDIQE PGLQAGTVTV ISRYSMVPVG RADGVKVTCR VEHESLEEPE 240
  241 LLPVILSVRY PPEVSISGYD DNWYLGRSEA TLTCEVRSNP EPTGYDWSTT SGVFPASAVA 300
  301 QGSQLLVHSV DRMVNTTFIC TATNAVGTGR AEQVILVRES PSTAGAGATG GIIGGIIAAI 360
  361 IATAVAGTGI LICRQQRKEQ RLQAADEEEE LEGPPSYKPP TPKAKLEEPE MPSQLFTLGP 420
  421 SEHSPVKTPY FDAGVSCADQ EMPRYHELPT LEERSGPLLL GATGLGPSLL VPPGPNVVEG 480
  481 VSLGLEDEEE DEEEEDFLDK INPIYDALSY PSPSDSYQSK DFFVSRAMYV

Type	Start	End	Confidence
Signal Peptide	1	31	0.99
N-region	1	22
H-region	23	28
C-region	29	31
Cleavage Site	31	32
Non-Cytoplasmic	32	345	0.99
Transmembrane Helix	346	372	0.88
Cytoplasmic	373	530	0.93