YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|60552131, gi|...
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.60
Topology Confidence: 0.49
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAHLLKTVVT GCLCPSVSNL GSCKVLPGKK DFLRTFRTHQ ALWCKSPAKP GIPYKQLTVG  60
   61 VPKEIFQNEK RVALSPAGVQ ALVKQGFNVV VESGAGEASK FPDDLYRAAG AQIQGTKEVL 120
  121 ASDLVVKVRA PMVNPTLGAH EADFLKPSGT LISFIYPAQN PDLLNKLSER KTTVLAMDQV 180
  181 PRVTIAQGYD ALSSMANISG YKAVVLAANH FGRFFTGQIT AAGKVPPAKI LIVGGGVAGL 240
  241 ASAGAAKSMG AVVRGFDTRA AALEQFKSLG AEPLEVDLKE SGEGQGGYAK EMSKEFIEAE 300
  301 MKLFAQQCKE VDILISTALI PGKKAPVLFS KEMIESMKEG SVVVDLAAEA GGNFETTKPG 360
  361 ELYVHKGITH IGYTDLPSRM ATQASTLYSN NITKLLKAIS PDKDNFHFEV KDDFDFGTMS 420
  421 HVIRGTVVMK DGNVIFPAPT PKNIPKEAPA KQKTVAELEA EKAGTVSMYT KTLRTASVYS 480
  481 AGLTGMLGLG IVAPNLAFSQ MVTTFGLAGI IGYHTVWGVT PALHSPLMSV TNAISGLTAV 540
  541 GGLALMGGHF YPSTTSQSLA ALATFISSVN IAGGFLVTQR MLDMFKRPTD PPEYNYLYLL 600
  601 PGGTFVGGYL AALYGGYNIE EIMYLGSGLC CVGALGGLST QGTARLGNAL GMIGVAGGLA 660
  661 ATLGGLKPDP QLLAQMSGAM AMGGTIGLAI AKRIQISDLP QLVAAFHSLV GLAAVLTCMA 720
  721 EYIVEYPHFA MDATSNFTKI VAYIGTYIGG VTFSGSLVAY GKLQGILKSA PLLLPGRHAL 780
  781 NAGLLAASVG GIIPFMADPS FTTGIMCLGS VSALSTLMGV TLTAAIGGAD MPVVITVLNS 840
  841 YSGWALCAEG FLLNNNLLTI VGALIGSSGA ILSYIMCVAM NRSLANVILG GYGTTSTAGG 900
  901 KPMEISGTHT EINLDNAVEM IREANSIVIT PGYGLCAAKA QYPIADLVKM LTEQGKKVRF 960
  961 GIHPVAGRMP GQLNVLLAEA GVPYDIVLEM DEINSDFPDT DLVLVIGAND TVNSAAQEDP1020
 1021 NSIIAGMPVL EVWKSKQVIV MKRSLGVGYA AVDNPIFYKP NTAMLLGDAK KTCDALQAKV1080
 1081 RESYQK

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle