YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|82616148
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.71
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	26	0.97
Transmembrane Helix	27	46	0.89
Non-Cytoplasmic	47	73	0.79
Transmembrane Helix	74	96	0.75
Cytoplasmic	97	122	0.86
Transmembrane Helix	123	143	0.88
Non-Cytoplasmic	144	153	0.77
Transmembrane Helix	154	175	0.93
Cytoplasmic	176	183	0.85
Transmembrane Helix	184	204	0.93
Non-Cytoplasmic	205	214	0.84
Transmembrane Helix	215	238	0.92
Cytoplasmic	239	273	0.95
Transmembrane Helix	274	295	0.89
Non-Cytoplasmic	296	317	0.89
Transmembrane Helix	318	338	0.94
Cytoplasmic	339	369	0.95
Transmembrane Helix	370	393	0.85
Non-Cytoplasmic	394	399	0.67
Transmembrane Helix	400	426	0.71
Cytoplasmic	427	446	0.89

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASAAEQLVS NLNFSAFSKA EELKKRIWFT LGALLVYRFG TYIPLPGINP DALAQAFQQH  60
   61 SQGVLGLFNM FAGGAVGRMA IFALGIMPYI SASIIVQLMT SVVPSLEALK NEGEAGRKII 120
  121 NQYTRYGTVL LALVQAYAIS VGLQSGNGIV TNPGPFFIVS SVITLVGGTM FLMWLGEQIT 180
  181 ARGIGNGISL IIFSGIVANL PHAISGTLEL GRTGALSTGL ILGVIVLAVA LVAVIVFVER 240
  241 AQRRLLIQYP KRQVGNRMFQ GDTSHLPLKL NTAGVIPPIF ASSLLLLPAT VAGFANTTEM 300
  301 PAWATTVLNA LGHGQPLYML FYAALMAFFC FFYTAIVFNP KDTADQLKKH SGFIPGIRPG 360
  361 ERTAEYIDYV LTRITVVGAI YIVLVCLLPE FLISATGVPF YLGGTSLLIV VSVTLDTVAQ 420
  421 IQGHLIAHQY EGLIKKSKLR GGKRNR