YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|62195339, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.68
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAQSLSNAQH RMRRRIARVF YLVGLFLAML VICLPGFWIV LSSLRPPVEI MAKPPVWIPQ  60
   61 DISLDAYRTM FSGAGAGGVP VWDYFRNSII VSVTSTVVSL IIGMSGGYAF ARFRFRGKSA 120
  121 TFLGFMLTRS VPGIALSLPL FMVYSRIGII DTHFGLILTY VALNIPFTTW LIDGFFRQVP 180
  181 KDLAEAAQID GCTRWQAFWQ VEFPLAGPGI ASAGIFAFLT CWNEYALASQ LTRSVNSKTL 240
  241 PVGLLDYTAE FTIDWRGMCA LAVVMIVPAL ALTFVIQKHL VSGLTFGAVK G

Type	Start	End	Confidence
Cytoplasmic	1	18	0.97
Transmembrane Helix	19	41	0.94
Non-Cytoplasmic	42	88	0.93
Transmembrane Helix	89	111	0.92
Cytoplasmic	112	121	0.81
Transmembrane Helix	122	144	0.84
Non-Cytoplasmic	145	152	0.63
Transmembrane Helix	153	176	0.76
Cytoplasmic	177	202	0.71
Transmembrane Helix	203	222	0.84
Non-Cytoplasmic	223	254	0.69
Transmembrane Helix	255	276	0.89
Cytoplasmic	277	291	0.68