YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|83573926, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.66
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSGTSVVNTL AVLLILTSML VVETRKLRMA AYMYSIQSLV LVAIFLSLAV FMHAEPLYIW  60
   61 SITALITKTF LVPYLILRTI KKVGDQEETG LALTTATSVF LAACMVALSF VIVEPFQVQA 120
  121 ILKLKVALAV SLAHFLLGVL CILARKNALK QILGYCLMEN GSHLTLAIMA YNAPETVEIG 180
  181 ILTDAVFAVI ILTIIARRLF KAFNTLDTDK LTLLKG

Type	Start	End	Confidence
Non-Cytoplasmic	1	5	0.66
Transmembrane Helix	6	22	0.73
Cytoplasmic	23	30	0.82
Transmembrane Helix	31	51	0.93
Non-Cytoplasmic	52	57	0.75
Transmembrane Helix	58	77	0.95
Cytoplasmic	78	89	0.88
Transmembrane Helix	90	113	0.92
Non-Cytoplasmic	114	120	0.89
Transmembrane Helix	121	144	0.88
Cytoplasmic	145	151	0.90
Transmembrane Helix	152	171	0.88
Non-Cytoplasmic	172	178	0.73
Transmembrane Helix	179	200	0.85
Cytoplasmic	201	216	0.96