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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|46401446
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.45
Topology Confidence: 0.23
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFDILFVMIF GLSGRVLTKD TDTKGRFSSP VLDVTEKQLV IERNQTLQLN CRGRWELQWV  60
   61 LPSGVPKLYP DTHIVNTQCG KKSNQYCSRL TLSPALTQHT GSYRCRYRQK ERKQTSVYIY 120
  121 ITDSQRPFVK VQSEIPDVVY MKEGEPLVFP CRVTNPDAKV SLVKFPLHRI TPDHRNIIWN 180
  181 SRQGFIIRSP TFFYIGLFSC ETIVDGVKYT NKFLTHRPVN KILDVYLNST GLVHTLQGEM 240
  241 LALNCTVTAE WNSRVSISWT YPQKANGSAI ISKRISRSRS NMLFYSVLTI PSLSKADKGL 300
  301 YKCQVTSGPS KRETNTTVIV YDQPFIRLKH RNGPVVQAFA GQKSFRLTPK LKAFPAPEII 360
  361 WLKDGMVAAE RCSRYHVDGF SLVIRDVAEE DAGIYTILTG IQQYGLFQNL TITLVVNVKP 420
  421 QIGEKSVSSQ QPGTVQRGSR QALHCTSHGV PPPQIQWLWH PCPPKGLCEK PPPSSWTAVR 480
  481 KKTGVTSTHN PILTISHRQE VLEGKNKTVG VLTVGEALVS GIYRCVTSNI LGRDELDIPF 540
  541 YVTDVKEGLV ASLVEEPREG GDLRLLCIAN RHLYSDLSWS RITSQITVWD EASGLDGELT 600
  601 EGQFSHTLHF GLKNLTARDS GTYRCSATHL LTGEHIHLDT AVEVTVLQAP VLLGNLSDHT 660
  661 VNVSNSITLR CPARGVPQPH ITWYKNQRKL QQVSGIMLFP EEGTLHIDRI TVEDQGFYTC 720
  721 QATNQRGSVE SSAYIWVQNS SESLSLEIPT LACTCVVATL FWLLLTLLIR KLKHPNSVNG 780
  781 KAEYLPIILH PGEEPLVEHC DRLQYDPAKW EFPRDRLKLE KPLGRGAFGR VMQASAVGIG 840
  841 NSASCTTVAV KMLKDGATPS EHKALMTELK ILNHIGHHIN VVNLLGACTK SGGPLMVIVE 900
  901 YCQFGNLSAY LKSKREVFLL NRVNKEEEGV MKEGCKGRLT SVSSRQSNAS SGFSEERGEI 960
  961 SEEDSDCLSE LSDPLLLEDL ISYSFQVARG MEFLASRKCI HRDLAARNIL LSNNNVVKIC1020
 1021 DFGLARDLYK DPDYVRNGDA RLPLKWMAPE SIFDKVFTTQ SDVWSYGVLL WEIFSLGASP1080
 1081 YPGLNMDEEF CRRLKHGTRM CSPQYSTPEI YSIMCACWEN NPEDRPSFTT LVEILGDLLQ1140
 1141 TCVQQDGKDY IPLNAFKSGE GHTITTHLNQ RDISQKALGN SSYISPGKIK AMSTFEDLHK1200
 1201 EIPDDEQSDS GMVLPSEELI QVKWTDRFKT KNITKFFSRG QSQPRLSSAP CCSDQTALPP1260
 1261 PHYEGDLLYP SF

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle