YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|83523740, gi\|...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.94
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAKGATSKSN HCLILSLFIL LSYLGTILAD GTDSLSCELT FNYRNLHGQC SVNGKTLLDF  60
   61 GDKKHEENAT KMCADLSQNL REISEEMWKL QSGNDTLNVT TQSQYNQGKF IDGFWAINTD 120
  121 EQHSIYFYPL NMTWRESHSD NSSAMEQWKN KNLEKDMRNF LITYFSHCLN KSSSHFREMP 180
  181 KSTLKVPDTT QRTNATQIHP TVNNFRHNSD NQGLSVTWIV IICIGGLVSF MAFMVFAWCM 240
  241 LKKKKKRCSL LLLFFCSPHY QL

Type	Start	End	Confidence
Signal Peptide	1	29	0.99
N-region	1	20
H-region	21	26
C-region	27	29
Cleavage Site	29	30
Non-Cytoplasmic	30	215	0.99
Transmembrane Helix	216	239	0.94
Cytoplasmic	240	262	0.96