YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SOX1B_DANRE
Protein type:	Transmembrane
Type Confidence:	0.90
Topology Confidence:	0.60
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYSMMMETDL HSPGAQTNTN TGHTGPNSGS KVNQDRVKRP MNAFMVWSRG QRRKMAQENP  60
   61 KMHNSEISKR LGAEWKLMSE AEKRPFIDEA KRLRAMHMKE HPDYKYRPRR KTKTLLKKDK 120
  121 YSLAGGLLAG SGGGGGVGLG MGAAGVGQRL ESPVGHGGST AASYAHMNGW TNGAYSGQVA 180
  181 AAAAAAAMMQ EAQLAYGQHP GSGAHHHHGH HHHPHNPQPM HRYEMTALQY SPLSNSQSYM 240
  241 SASPSGYGGI SYTQHQNSSV ASSGAIGALG SLVKSEPSVS PPVNAHSRAP CSGDLREMIS 300
  301 MYLPTAEAGD PSVQSRLHAV PQHYQSSTTS VNGTVPLTHI

Type	Start	End	Confidence
Cytoplasmic	1	122	0.89
Transmembrane Helix	123	145	0.84
Non-Cytoplasmic	146	340	0.60