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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: ECHA_RAT
Protein type: Globular with Signal Peptide
Type Confidence: 0.59
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVASRAIGSL SRFSAFRILR SRGCICHSFT TSSALLSRTH INYGVKGDVA VIRINSPNSK  60
   61 VNTLNKEVQS EFVEVMNEIW ANDQIRSAVL ISSKPGCFVA GADINMLASC TTPQEAARIS 120
  121 QEGQKMFEKL EKSPKPVVAA ISGSCLGGGL ELAIACQYRI ATKDRKTVLG VPEVLLGILP 180
  181 GAGGTQRLPK MVGVPAAFDM MLTGRNIRAD RAKKMGLVDQ LVDPLGPGIK SPEERTIEYL 240
  241 EEVAVNFAKG LADRKVSAKQ SKGLMEKLTS YAMTIPFVRQ QVYKTVEEKV KKQTKGLYPA 300
  301 PLKIIDAVKT GLEQGNDAGY LAESEKFGEL ALTKESKALM GLYNGQVLCK KNKFGAPQKT 360
  361 VQQLAILGAG LMGAGIAQVS VDKGLKTLLK DTTVTGLGRG QQQVFKGLND KVKKKALTSF 420
  421 ERDSIFSNLI GQLDYKGFEK ADMVIEAVFE DLAVKHKVLK EVESVTPEHC IFASNTSALP 480
  481 INQIAAVSQR PEKVIGMHYF SPVDKMQLLE IITTDKTSKD TTASAVAVGL KQGKVIIVVK 540
  541 DGPGFYTTRC LAPMMSEVIR ILQEGVDPKK LDALTTGFGF PVGAATLADE VGIDVAQHVA 600
  601 EDLGKAFGER FGGGSVELLK LMVSKGFLGR KSGKGFYIYQ SGSKNKNLNS EIDNILVNLR 660
  661 LPAKPEVSSD EDIQYRVITR FVNEAVLCLQ EGILATPEEG DIGAVFGLGF PPCLGGPFRF 720
  721 VDLYGAQKVV DRLRKYESAY GTQFTPCQLL RDLANNSSKK FYQ

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle