YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	NU5C_SOLTU
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.44
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	7	0.95
Transmembrane Helix	8	29	0.93
Cytoplasmic	30	39	0.80
Transmembrane Helix	40	60	0.93
Non-Cytoplasmic	61	87	0.91
Transmembrane Helix	88	110	0.90
Cytoplasmic	111	119	0.89
Transmembrane Helix	120	140	0.92
Non-Cytoplasmic	141	146	0.79
Transmembrane Helix	147	167	0.93
Cytoplasmic	168	178	0.89
Transmembrane Helix	179	201	0.87
Non-Cytoplasmic	202	220	0.93
Transmembrane Helix	221	242	0.90
Cytoplasmic	243	260	0.87
Transmembrane Helix	261	281	0.93
Non-Cytoplasmic	282	288	0.80
Transmembrane Helix	289	311	0.93
Cytoplasmic	312	322	0.81
Transmembrane Helix	323	343	0.83
Non-Cytoplasmic	344	353	0.67
Transmembrane Helix	354	374	0.91
Cytoplasmic	375	392	0.91
Transmembrane Helix	393	414	0.91
Non-Cytoplasmic	415	425	0.88
Transmembrane Helix	426	447	0.88
Cytoplasmic	448	541	0.96
Transmembrane Helix	542	563	0.92
Non-Cytoplasmic	564	600	0.94
Transmembrane Helix	601	619	0.93
Cytoplasmic	620	690	0.87
Transmembrane Helix	691	710	0.55
Non-Cytoplasmic	711	717	0.38
Transmembrane Helix	718	737	0.96
Cytoplasmic	738	739	0.44

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEQTYEYAWI IPFIPLPVPM LIGAGLILFP TATKSFRRMW AFQSVLLLSI VMIFSIYLSI  60
   61 QQINSSSVYQ YVWSWIINND FSLDFGYLID PLTSIMSILI TTVGIMVLIY SDNYMAHDQG 120
  121 YLRFFAYMSF FSTSMLGLVT SSNLIQIYIF WELVGLCSYL LIGFWFTRPV AANACQKAFV 180
  181 TNRVGDFGLL LGILGFYWIT GSFEFRDLFE IFNNLIYNNE VNFLFVTLCA VLLFAGAVAK 240
  241 SAQFPLHVWL PDAMEGPTPI SALIHAATMV AAGIFLVARL LPLFRVIPYI MYLISVIGII 300
  301 TVLLGATLAL AQKDIKRGLA YSTMSQLGYM MLALGMGSYR SALFHLITHA YSKALLFLGS 360
  361 GSIIHSMETI VGYSPAKSQN MGLMGGLRKH VPITKITFLL GTLSLCGIPP LACFWSKDEI 420
  421 LNDSWLYSPI FAIIAWATAG LTAFYMFRIY LLTFEGHLNV HFQNYDGKHK TPFYSISLWG 480
  481 KNGVKKNSCL LTMNNNESTY FLSKTKYPID KNGRKMTRPF MTIAHFEHKA VSSYPYESDN 540
  541 TMLFPIFVLG LFTLFVGAIG IPFNQEGVNL DILSKWLAPS INLLHPKSNN SQDWNEFLKD 600
  601 AVVSVSIAYF GIFIASFLYK PIYSSLKNLE FINSFVKKGP KRILWDKILN GIYDWSYNRA 660
  661 YIDAFYTRFF VGGIRGLAEF THFFDRRVID GMTNGVGVIS FIVGEGIKYI GGGRISSYLF 720
  721 LYLAYVSVFL LVYYLLFST