YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|55772523, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.76
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	38	0.97
Transmembrane Helix	39	58	0.92
Non-Cytoplasmic	59	63	0.85
Transmembrane Helix	64	85	0.90
Cytoplasmic	86	219	0.99
Transmembrane Helix	220	238	0.96
Non-Cytoplasmic	239	247	0.68
Transmembrane Helix	248	271	0.92
Cytoplasmic	272	602	0.97
Transmembrane Helix	603	624	0.90
Non-Cytoplasmic	625	636	0.70
Transmembrane Helix	637	659	0.76
Cytoplasmic	660	682	0.90
Transmembrane Helix	683	704	0.88
Non-Cytoplasmic	705	714	0.65
Transmembrane Helix	715	732	0.94
Cytoplasmic	733	743	0.79
Transmembrane Helix	744	766	0.89
Non-Cytoplasmic	767	773	0.73
Transmembrane Helix	774	794	0.91
Cytoplasmic	795	809	0.93

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLGLTSEEAK KRLREYGPNA LPERPAEPFS RKLLRQFQSP LIYILLLALL VDLLLWLYEG  60
   61 ARGVPLESLV ILAILLLNAL LGAFQEKRSE EALKRLKALA EPSVWVLRDG RFQRLSARGL 120
  121 VPGDVVRLEA GDRVPADGVL LEGSGLLVDE SVLTGESVPV EKGVGEEVFA GTLLVRGRAL 180
  181 LEVTRTGAQS AMGRIAHLLA EMEEEKTPLE RRLHAFGHRV ARLVLLLALG LLLLGFLVEG 240
  241 VSAKVVLFAV ALAVAAVPEG LPAVLTLALA LGVERMARRK AVVRRLSAVE ALGSVTVIAT 300
  301 DKTGTLTENR MEVQELLSPD PEKALLAMVL CNDADLATGA GDPLELGLLR YASRFLDVER 360
  361 VRREHPRLSE RPFDSAWKFM RVTTPLGSFL KGAPEALIPR LALPQEEQAR LFEEAGAHAA 420
  421 KGFRVLALAF GEGEREEGLR FLGFVLLLDP PRPEVPEAVA RVLKAGVRVV MVTGDHPATA 480
  481 LAIARRVGMP AEVVATGEEL EALSDEELLK VDVFARVRPE QKLRIVEALQ KAGEVVAMTG 540
  541 DGVNDAPALK RADVGVAMGQ RGSDVSREVA DLVLLDDNFA TIVAAIEEGR SIYENIQKFL 600
  601 RFLFSTNLSE VLVVALGMVL AALLGLRDEA GHLLLPLTAV QILWINLVTD GLPALALSLD 660
  661 RNPGVLDRPP RPKESPLLDG PSLRFVLLTG ALKAGLALGL LGFLPGAVGL EAAQSATFHF 720
  721 MAIGQLFFAY AARHTDLRPL ANPYLHGAVG LSALAQVALG VGLPGALEAV PLPLGVWLLV 780
  781 FGMALLAFAL AEAVDRAVWK RGAAYAPPR