YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|55980703, gi\|...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.97
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDRPPSRWLL LLALGTPALA QSEAASPENP WLWVLVLLFA LSAFFSASET AITTLYPWKL  60
   61 RELAESKNGP FRLLSKDITR FLTTILVGNN LVNIAATALV TELATRAFGS AGVGVATGAM 120
  121 TFLILFFGEI TPKALAVHHA EAIARLAAWP IYGLSVLFYP LGRFFSLVSG GLLRLLGLEP 180
  181 RGTPLVSEEE LKLILAGAEE SGAIEPQEEE MIHSILELEE TPVREIMTPR VEMVAIEDEA 240
  241 TLEDLLALYR EHRYSRVPVY RESVDHIVGV AYVQDLLTYY CEEDLKAFKV ASIAHPPYFV 300
  301 PENMDAWSLL KELRRRKVHM AIVVDEFGGT AGLVTLEDVI EEIVGEIYDE SDEPEEHPIR 360
  361 LLPDGAYSIQ AQTPIDEVSE ALGVELPEGE YDTLSGFLYA LFGRIPSVGE SLEWQGFRFV 420
  421 VESADQRRLE RIRVERVVER ERQGG

Type	Start	End	Confidence
Signal Peptide	1	20	0.97
N-region	1	11
H-region	12	17
C-region	18	20
Cleavage Site	20	21
Non-Cytoplasmic	21	35	0.87
Transmembrane Helix	36	58	0.93
Cytoplasmic	59	77	0.96
Transmembrane Helix	78	100	0.91
Non-Cytoplasmic	101	106	0.83
Transmembrane Helix	107	128	0.92
Cytoplasmic	129	145	0.81
Transmembrane Helix	146	167	0.81
Non-Cytoplasmic	168	445	0.96