YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|197096627, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.67
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	109	0.98
Transmembrane Helix	110	130	0.92
Non-Cytoplasmic	131	157	0.88
Transmembrane Helix	158	178	0.92
Cytoplasmic	179	186	0.75
Transmembrane Helix	187	207	0.92
Non-Cytoplasmic	208	224	0.95
Transmembrane Helix	225	244	0.90
Cytoplasmic	245	254	0.81
Transmembrane Helix	255	277	0.94
Non-Cytoplasmic	278	297	0.79
Transmembrane Helix	298	320	0.84
Cytoplasmic	321	339	0.73
Transmembrane Helix	340	361	0.81
Non-Cytoplasmic	362	369	0.66
Transmembrane Helix	370	390	0.67
Cytoplasmic	391	398	0.78
Transmembrane Helix	399	419	0.90
Non-Cytoplasmic	420	437	0.76
Transmembrane Helix	438	460	0.92
Cytoplasmic	461	472	0.97

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKVKQADID RLIDLVGGRD NIAAVSHCIT RLRFVLHQPA NARPKEIEQL PMVKGCFTNA  60
   61 GQFQVVIGTD VGDYYNALLE TTGKAYADKE QAKKAARQNM KWHEQLISHF AEIFFPLLPA 120
  121 LISGGLILGF RNVIGDVPMS HGQTLAQMHP ALKTLYDFLW LIGEAIFFYL PVGICWSAVK 180
  181 KMGGTPILGI VLGVTLVSPQ LMNAYLLGQQ TPDVWNFGVF SIEKIGYQAQ VIPALLAGLA 240
  241 LGFIETRLKR IVPDYLYLVV VPVCSLILAV FLAHAFIGPF GRMIGDGVAF AVRYLMTGSF 300
  301 APIGAALFGF LYAPLVITGV HQTTLAIDMQ MVQSMGGTPV WPLIALSNIA QASAVVGIII 360
  361 SSRKHNEREI SVPAAISAYL GVTEPAMYGI NIKYRFPMLC AMIGSGLAGL LCGLNGVMAN 420
  421 GIGVGGLPGI LSIQPTYWQV FAMAMVIAIV IPVILTTFIY QRKHRQGTLQ IV