YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|56130194, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.89
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAQRDYVRRG QPAPSRRKKS TSQNSRKKQS NMPAVSPAMV AIAAAVLVTF IGGLYFITHH  60
   61 KKEESETLQN QKVTGNGLPP KPEERWRYIK ELESRQPGVR TPTEPSAGGE VMNPNQLTSE 120
  121 QRQLLEQMQA DMRQQPTQLN EVPWNEQTPE QRQQTLQRQR QAQQQWAQTQ PVQQPRTQPR 180
  181 VNEQPQTRTV QSAPAQPARQ SQPPKQTASQ QPYQDLLQTP AHTSAAAPKA APITRAPEAP 240
  241 KATAEKKDER RWMVQCGSFK GAEQAESVRA QLAFEGFDSK ITTNNGWNRV VIGPVKGKEN 300
  301 ADSTINRLKM AGHTNCIRLA TGG

Type	Start	End	Confidence
Cytoplasmic	1	34	0.89
Transmembrane Helix	35	57	0.92
Non-Cytoplasmic	58	323	0.92