YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|56129839, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.55
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	11	0.92
Transmembrane Helix	12	33	0.91
Cytoplasmic	34	40	0.78
Transmembrane Helix	41	60	0.93
Non-Cytoplasmic	61	73	0.78
Transmembrane Helix	74	95	0.90
Cytoplasmic	96	115	0.90
Transmembrane Helix	116	147	0.79
Non-Cytoplasmic	148	153	0.53
Transmembrane Helix	154	180	0.80
Cytoplasmic	181	194	0.51
Transmembrane Helix	195	217	0.83
Non-Cytoplasmic	218	248	0.61
Transmembrane Helix	249	266	0.92
Cytoplasmic	267	298	0.94
Transmembrane Helix	299	320	0.85
Non-Cytoplasmic	321	367	0.90
Transmembrane Helix	368	387	0.95
Cytoplasmic	388	405	0.86
Transmembrane Helix	406	427	0.87
Non-Cytoplasmic	428	432	0.81
Transmembrane Helix	433	455	0.88
Cytoplasmic	456	466	0.71
Transmembrane Helix	467	488	0.55
Non-Cytoplasmic	489	497	0.48
Transmembrane Helix	498	515	0.65
Cytoplasmic	516	526	0.76
Transmembrane Helix	527	546	0.93
Non-Cytoplasmic	547	551	0.66

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNLWQQNYDP AGNIWLSSLI ASLPILFFFF ALIKLKLKGY VAASWTVVIA LAVALLFYKM  60
   61 PVDHALASVV YGFFYGLWPI AWIIIAAVFV YKISVKTGQF DIIRSSILSI TPDQRLQMLI 120
  121 VGFCFGAFLE GAAGFGAPVA ITAALLVGLG FNPLYAAGLC LIVNTAPVAF GAMGIPILVA 180
  181 GQVTGLDSFE IGQMVGRQLP FLTIIVLFWI MAIMDGWRGV KETQPAVMVS GGSFAIAQYL 240
  241 SSNFIGPELP DIISSLVSLV CLTLFLKRWQ PVRIFRFGDM GASQVDQTLA RTRYTTGQIV 300
  301 RAWSPFLFLT ATVTLWSVPP FKALFAPGGA LYDWVINVPV PYLDKLVARM PPVVHEATAY 360
  361 AAVYKFDWFS ATGTAILFAA LLSIVWLKMK PSAAIQTFGS TLKELALPIY SIGMVLAFAF 420
  421 ISNYSGLSST LALALAHTGS AFTFFSPFLG WLGVFLTGSD TSSNALFASL QATAAQQIGV 480
  481 SDVLMVAANT TGGVTGKMIS PQSIAIACAA VGLVGKESDL FRFTVKHSLI FTCMVGVITT 540
  541 LQAYVLTWMI P