YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	YCJF_SALPK
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.53
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSEPLKPRID FAEPLKEEPT SAFKAQQTFS EAESRTFAPA AIDERPEDEG VAEAAVDAAL  60
   61 RPKRSLWRKM VMGGLALFGA SVVGQGVQWT MNAWQTQDWV ALGGCAAGAL IVGAGVGSVV 120
  121 TEWRRLWRLR QRAHERDEAR ELLHSHSVGK GRAFCEKLAQ QAGIDQSHPV LQRWYAAIHE 180
  181 TQNDREIVGL YANLVQPVLD AQARREISRF AAESTLMIAV SPLALVDMAF IAWRNLRLIN 240
  241 RIATLYGIEL GYYSRLRLFR LVLLNIAFAG ASELVREVGM DWMSQDLAAR LSTRAAQGIG 300
  301 AGLLTARLGI KAMELCRPLP WIDNDKPRLG DFRRQLIGQL KETLQKSKSS PEK

Type	Start	End	Confidence
Cytoplasmic	1	69	0.98
Transmembrane Helix	70	89	0.93
Non-Cytoplasmic	90	98	0.86
Transmembrane Helix	99	121	0.94
Cytoplasmic	122	213	0.97
Transmembrane Helix	214	233	0.82
Non-Cytoplasmic	234	353	0.53