YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|197361909, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEWIADPSIW AGLVTLIVIE LVLGIDNLVF IAILAEKLPP GQRDRARITG LILAMIMRLL  60
   61 LLASISWLVT LTKPLFSVQA LSFSARDLIM LFGGFFLLFK ATMELNERLE GKDSANPTQR 120
  121 KGAKFWAVVA QIVVLDAIFS LDSVITAVGM VDHLAVMMAA VIIAISLMLL ASKSLTRFVN 180
  181 NHPTIVILCL SFLLMIGFSL VAEGFGFHIP KGYLYAAIGF SVMIESLNQL AIFNRRRFLS 240
  241 ANHTLRQRTT EAVMRLISGK KEDAETAAML ADHDDSQIFN PQERRMIERV LNLNQRTVSS 300
  301 IMTSRHDIEH IDLNAPEAEI RALLEKNQHT RLVVTGENEQ EDLLGVVHVI DLLQQSLRGE 360
  361 PLNLRALIRQ PLVFPETLPL LPALEQFRNA RTHFAFVVDE FGSVEGIVTL SDVMETIAGN 420
  421 LPNEVEEIDA RHDIQKNPDG SWTANGHMPL EDLVQYVPLP LDEKREYHTI AGLLMEYLQR 480
  481 IPQTGEEVQV GDYLLKTLQV ESHRVQKVQL IPLHNGEPD

Type	Start	End	Confidence
Non-Cytoplasmic	1	8	0.94
Transmembrane Helix	9	34	0.85
Cytoplasmic	35	47	0.93
Transmembrane Helix	48	71	0.88
Non-Cytoplasmic	72	82	0.79
Transmembrane Helix	83	102	0.91
Cytoplasmic	103	121	0.96
Transmembrane Helix	122	145	0.85
Non-Cytoplasmic	146	152	0.71
Transmembrane Helix	153	172	0.93
Cytoplasmic	173	183	0.77
Transmembrane Helix	184	205	0.90
Non-Cytoplasmic	206	212	0.79
Transmembrane Helix	213	233	0.91
Cytoplasmic	234	519	0.97