YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|56126752, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLKYRLISAF VLIPAVIAAL FLLPPVGFAI ITLVVCMLAA WEWGQLSGFA ARSQRVWLAV  60
   61 LCGLLLALML FLLPEYHHNI RQPLVEMSLW ASLGWWVVAL LLVLFYPGSA AIWRNSKTLR 120
  121 LIFGLLTIVP FFWGMLALRA WHYDENHYSG AIWLLYVMIL VWGADSGAYM FGKLFGKHKL 180
  181 APKVSPGKTW QGFIGGLVTA AVISWGYGMW ANLNVAPVIL LICSVVAALA SVLGDLTESM 240
  241 FKREAGIKDS GHLIPGHGGI LDRIDSLTAA VPVFACLLLL VFRTL

Type	Start	End	Confidence
Non-Cytoplasmic	1	6	0.58
Transmembrane Helix	7	41	0.78
Cytoplasmic	42	55	0.75
Transmembrane Helix	56	74	0.96
Non-Cytoplasmic	75	90	0.80
Transmembrane Helix	91	110	0.91
Cytoplasmic	111	120	0.74
Transmembrane Helix	121	141	0.93
Non-Cytoplasmic	142	150	0.81
Transmembrane Helix	151	172	0.92
Cytoplasmic	173	188	0.90
Transmembrane Helix	189	209	0.92
Non-Cytoplasmic	210	214	0.82
Transmembrane Helix	215	237	0.87
Cytoplasmic	238	263	0.89
Transmembrane Helix	264	282	0.68
Non-Cytoplasmic	283	285	0.54