YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|66970323, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.46
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLFRNNRKRF RFQNQKQLHT QQQDNRQQSL LSSDLDGNLK VLRSMYKDCF DVIFRTFWIG  60
   61 GQAKATLIYV EGLSNVEEID NYVLTPLMSE TEEIAHSLHE MLEKKIHISK IKEVKTFADC 120
  121 IENISIGNPV LLVQQEMSGL ALGLPKWEKR SIEEPEAESV VRGPREGFVE TLGVNTALLR 180
  181 KKIKSPDFKM KSIKIGRYTD TSIVIAYIEG IADQTLIEEV QNRLQRIEID GVLESGYIEE 240
  241 LIEDNPYSPF PQLLNTERPD VAAANLLEGR VIILVDGTPF VLIAPISFFS LLQSPEDYYQ 300
  301 RFLISSAIRL LRFVFMVFSL VLPSLYVAIL TYHQEMVPTS LLISAASSRE AVPFPALVEA 360
  361 LMMEVTFEAL REAGVRLPKQ VGAAVSIVGA LVIGQAAVQA GLVSAPMVIV VAITGVSSFM 420
  421 VPHYTQGIAL RMLRFPIMFL AGSLGLLGVM LGMITIVVHL CTLRSFGIPY LTPIAPMKGR 480
  481 ELKDTLIRAP WWMMNTRPRL TSEYSQYRQA PDQKPDPSKG DES

Type	Start	End	Confidence
Non-Cytoplasmic	1	271	0.53
Transmembrane Helix	272	292	0.61
Cytoplasmic	293	309	0.70
Transmembrane Helix	310	332	0.90
Non-Cytoplasmic	333	350	0.58
Transmembrane Helix	351	367	0.46
Cytoplasmic	368	379	0.62
Transmembrane Helix	380	398	0.78
Non-Cytoplasmic	399	404	0.53
Transmembrane Helix	405	425	0.86
Cytoplasmic	426	436	0.73
Transmembrane Helix	437	460	0.90
Non-Cytoplasmic	461	523	0.84