YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|56179493, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.66
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKQCAFIGL GVMGYPMAGH LQKAGHKVTV YNRTQATAEK WAKEYSGHCQ PTPAEAVKEA  60
   61 DFVMVCVGND DDVRSVFYGD DGILANLKPG AVVVDHTTAS AELARELEQA VNEKQGSFLD 120
  121 APVSGGQAGA ENGVLTAMIG GEQQTFEAAD ELFQCYAKTR QLMGPVGSGQ LAKMVNQICI 180
  181 AGVLQGLSEG LQLARKVGLD PDKLIAAISQ GAAGSWQMEN RYKTMWNNHY EHGFAVDWMR 240
  241 KDLKIALAEA DRQGLSLPAT ALVDQFYADV QKMGGSRWDT SSLLARLEK

Type	Start	End	Confidence
Signal Peptide	1	18	0.65
N-region	1	9
H-region	10	15
C-region	16	18
Cleavage Site	18	19
Non-Cytoplasmic	19	289	0.99