YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|56179072, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLTTEERQRS PLLKKLHIDG PLLIPLVLLS VLSLFVIYSA AGQDLEVVER QSIRIGLSFV  60
   61 VLFVVAQIPP RALSRFAVPA FGAGVLLLVA VLVFGEMGKG AQRWLDIGPL TIQPSEIMKL 120
  121 AMPLMLAWYM NQHPIPPSIY RLFGALVLVI IPTLLIARQP DLGTSLLVAC AGLFVIFLAG 180
  181 LSWKLVTAAA ISTAAFTPVL WFYLMHDYQR QRVLTFLNPE RDPLGSGYHI IQSKIAIGSG 240
  241 GIDGKGWLQG TQSQLEFLPE RHTDFIFSVF SEEFGLTGVI LLLALYGFII LRGLIIALQT 300
  301 QDIFCKLLAG SLTLTFFVYV FVNIGMVSGL LPVVGVPLPL ISYGGTSMVT LMAGFGMLMS 360
  361 IATHHRLVMK NG

Type	Start	End	Confidence
Cytoplasmic	1	20	0.86
Transmembrane Helix	21	41	0.95
Non-Cytoplasmic	42	50	0.80
Transmembrane Helix	51	69	0.83
Cytoplasmic	70	75	0.71
Transmembrane Helix	76	95	0.93
Non-Cytoplasmic	96	136	0.66
Transmembrane Helix	137	157	0.91
Cytoplasmic	158	162	0.63
Transmembrane Helix	163	197	0.80
Non-Cytoplasmic	198	273	0.66
Transmembrane Helix	274	296	0.91
Cytoplasmic	297	306	0.79
Transmembrane Helix	307	331	0.79
Non-Cytoplasmic	332	339	0.73
Transmembrane Helix	340	363	0.85
Cytoplasmic	364	372	0.83