YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	FTSW_IDILO
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	40	0.97
Transmembrane Helix	41	62	0.91
Non-Cytoplasmic	63	74	0.88
Transmembrane Helix	75	96	0.90
Cytoplasmic	97	107	0.78
Transmembrane Helix	108	126	0.95
Non-Cytoplasmic	127	137	0.76
Transmembrane Helix	138	157	0.90
Cytoplasmic	158	171	0.88
Transmembrane Helix	172	193	0.83
Non-Cytoplasmic	194	212	0.70
Transmembrane Helix	213	233	0.94
Cytoplasmic	234	252	0.90
Transmembrane Helix	253	273	0.85
Non-Cytoplasmic	274	300	0.88
Transmembrane Helix	301	322	0.91
Cytoplasmic	323	335	0.91
Transmembrane Helix	336	357	0.89
Non-Cytoplasmic	358	369	0.75
Transmembrane Helix	370	391	0.93
Cytoplasmic	392	409	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTVREEQLN LEIPASDVGS RWQKLINWFQ PKASQPLYDR MLFTLAMALL AFGFVMVTSA  60
   61 SLPTADRLTG NPFHFAIRHG IYILISLAVM LATLRVPANS WNQQSGKLLL LGLIMLLMVL 120
  121 VVGYEVNGAQ RWIKVGPITF QAAEVAKLFF CIYMASYLSR REDEVREATK GFIKPLALLF 180
  181 IAAVLLLMQP DFGTVVVLSA TTVAMLFLAG ARLWQFFAVF ITCVLALILL IIVEPYRMQR 240
  241 LLTFLEPEKD PFGAGYQLMQ SLIAFGQGHF SGAGLGNSIQ KLQYLPEAHT DFIMAVVAEE 300
  301 LGFLGVLAVI ATVLMLVWRA LIIGRRCLMQ EQRYGGYLAY GIGIWFSIQA FVNIGVASGA 360
  361 LPTKGLTLPL VSYGGNSLII SALAVGLLLR IDHERRMLGR KVAPRGGAE