YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|58338030, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.73
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	314	0.78
Transmembrane Helix	315	336	0.90
Non-Cytoplasmic	337	346	0.66
Transmembrane Helix	347	370	0.85
Cytoplasmic	371	376	0.63
Transmembrane Helix	377	397	0.73
Non-Cytoplasmic	398	404	0.81
Transmembrane Helix	405	427	0.89
Cytoplasmic	428	444	0.90
Transmembrane Helix	445	465	0.94
Non-Cytoplasmic	466	481	0.66
Transmembrane Helix	482	504	0.75
Cytoplasmic	505	525	0.64
Transmembrane Helix	526	547	0.89
Non-Cytoplasmic	548	563	0.66
Transmembrane Helix	564	584	0.75
Cytoplasmic	585	590	0.76
Transmembrane Helix	591	612	0.90
Non-Cytoplasmic	613	632	0.84
Transmembrane Helix	633	655	0.91
Cytoplasmic	656	665	0.90

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRIKDILSPE SMIMELKATN KEDAIKEMAD LEVATDVVND EDAFIKSIWA RENESTTGIG  60
   61 GGIAMPHARN KSINKARVLF AKSKEGIDYD SLDGQPVHLF FMITAPEGAD NTHLQALAKL 120
  121 SGLLIDPELV EKLKATKTPE EVIDLFEKAE AKKDEEDKKA AEARKAKEAA KAQGSSDDDN 180
  181 KPLIVGVTAC INGIAHTYMA QEALIKEGKK RGIEVRIETN GSEGVKDKLT PDEIKRAKGV 240
  241 IIASDKKVDM PRFDGKPLVN HPVVDGINKP GELIDDIMDG KADTYHASAA DKSEESSSTE 300
  301 KPGLWASIYK NLMSGISHML PFVIGGGILM AISFIVENYG GGAKTPAFIF LNNAGNLAFA 360
  361 FMVPVLSAYI AESIGDLPAL MPGFVGGYMA SIANGQFQVN VQAHATSPAG FLGGIAAGFI 420
  421 AGYLMIGLKK AFAKLPRSVE GMKPMLFYPI LGLLFIAAIM FYIINPIFSG VNFAITHFLN 480
  481 SMGTGNLVLL TTILAGMMSI DMGGPFNKAA YVFASGAFAN DPHSTTAAIL MAAVMVGGMV 540
  541 PPFATAIGTT FFKNKYTMEE RRAGVSNWVL GFSFITEGAI PFAAADPGRV IPSCIIGSAV 600
  601 GGALVGLWHV GVPAPHGGLW VSPLAGNIGG PMHILFYFLA TIIGSIVAGL IMSFWKKNVK 660
  661 DDPNE