YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|58336979, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.64
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNYKKHRGET LFKRWFLNNR FSIVLLNILL FFLIIWVFNK ISFVLNPAWV FFSAILPPLL  60
   61 LALIQYYIMN PVVDWFEKKF RVPRVLTIIV LFLFVVIAMI WIINILVPIA QHQINSLVKN 120
  121 WPHIWNDAVN ATQNALRDPR LHSVKGSIQG MIDDTQKTLF KSGQNTVNST LGNISSAVSI 180
  181 ITMIVMTLLT APFILFFMLK DGHQLRPYIT KFVPETWQQS FSKLLYDINY AVASYIRGQI 240
  241 TVAFWVGVMF TIGYIIIGLP YGLALAILAG FMNLIPYFGT PLALIPVIVI SIMTSGSMLV 300
  301 KVLIVFAIEQ TIETRILSPL VMGNKMQMHP VTTILLLIGA SSVWGLWGVI FGIPIYAVLK 360
  361 IIVSRVYNYY RRESDIFSNE DAASLTTGDA DESKK

Type	Start	End	Confidence
Cytoplasmic	1	20	0.87
Transmembrane Helix	21	38	0.97
Non-Cytoplasmic	39	47	0.78
Transmembrane Helix	48	69	0.92
Cytoplasmic	70	84	0.91
Transmembrane Helix	85	107	0.89
Non-Cytoplasmic	108	176	0.96
Transmembrane Helix	177	199	0.92
Cytoplasmic	200	241	0.96
Transmembrane Helix	242	267	0.85
Non-Cytoplasmic	268	281	0.68
Transmembrane Helix	282	305	0.87
Cytoplasmic	306	328	0.75
Transmembrane Helix	329	358	0.77
Non-Cytoplasmic	359	395	0.64