YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|60495135, gi|...
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.99
Topology Confidence: 0.95
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKNTFCVLAC FFITIFCQAQ SVEEHYYFKN LSIRNGLSQN TVNAILQDRK RFMWLGTKDG  60
   61 LNRYDGLSFR KFKHDAANPR SIGNSFITSL YEDFNGNIWV GTDAGVYIYY PEKEAFEEFD 120
  121 CQSLEKTRIE RSVSMIAGDK QGRVWIAVEA QGMFCYDTRQ KLLRNYPLSE ISSNIKCFTF 180
  181 DSGGTLWLGF YGDGLYYSKD NLATVHPYGS PEDGKREFEG GVITKIVQGN YNCLYIGSVK 240
  241 EGVSELNLTS GQVRNLLAID ESGESIFCRD LLPYSDNELW IGTESGIYIY NLRTAQFIHL 300
  301 RASLYDSYSL SDNAIYALYK DREEGLWIGS YFGGVDYYPR QYTYFAKYYP KNIANSLHGK 360
  361 RVREFCRADD GTLWIGTEDG GLNHFNPKTK EFHFFEPSAG FTNIHGLCMD GSHLWVGTFS 420
  421 KGLRVIDTRT GVVLRTYTEG HTPHSLNDNS IFSICRTSAG EIYLGTLFGL LRYNRTQDSF 480
  481 DCIPELNGKF VYDIKEDSYG NLWLATYANG AYCYDVSARR WKNYVFDAED ERSLPYDKVL 540
  541 SVFEDSYRQI WLTTQGGGFC LFHPDTETFT RYGLKDGLPN DVVYQIVEDD DRFLWLTTNN 600
  601 GLVRFDPKTM EMKVFSTANG LPTNQFNYRS GFKDEAGNIY LGSINGFVAF DPRTFAENRQ 660
  661 VPAVAITDFL LFNKEVPVGE TDSPLKSSIT FSDKVVLTAD QNSFSFRIAA LSYQAPRMNK 720
  721 LMYKLEGFDE GWLTIGESPL VTYSNLGYGD YVFKVKASNS DGVWNEQETS LHLSILPPFY 780
  781 LSGWAYCFYV LFFMGCLVCV IFYFKRRNYR KQHRQMEMLE QEKEREVYHA KIDFFTNVAH 840
  841 EIRTPLTLIK GPLENIILKK EVDSETKEDL YIMKQNTERL LNLTNQLLDF RKTETRGFRL 900
  901 NFTECDVVAV LRETYLRFTS LAKQKGLDFI LELPQECFMA DVNQEALTKI ISNLLNNGVK 960
  961 YASTYLRISL ETDEKVFHIR TFNDGEMIPD TMKEEIFKPF VRLDKEDEVT TGTGIGLALS1020
 1021 RSLAELHQGS LMMEKGEEVN CFCLTLPVNQ DSTITLSAEN VSQVEENSCG WEQEETDTKE1080
 1081 KKPMILVVED NPDMLAFIRK QLTTEYSVLT AMNGIEALAV LDNHYVNLVV SDVMMPQMDG1140
 1141 FELCKTIKSD LSYSHIPVVL LTAKTNIQSK IEGLELGADA YIEKPFSVEY LLANISSLIH1200
 1201 NREKLRQTFA KSPFVAANTM ALTKADEEFI WKLNDIIQAN LHNPEFSMED MADALKMSRS1260
 1261 SFYRKIKGVL DLSPNEYLRL ERLKQAAQLL KEGKSRVNEI CYTVGFNSPS YFSKCFLKQF1320
 1321 GVLPKDFIG

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle