YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|60493937, gi\|...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	19	0.99
N-region	1	10
H-region	11	16
C-region	17	19
Cleavage Site	19	20
Non-Cytoplasmic	20	215	0.99
Transmembrane Helix	216	240	0.92
Cytoplasmic	241	260	0.86
Transmembrane Helix	261	285	0.90
Non-Cytoplasmic	286	294	0.82
Transmembrane Helix	295	316	0.92
Cytoplasmic	317	336	0.86
Transmembrane Helix	337	362	0.87
Non-Cytoplasmic	363	374	0.79
Transmembrane Helix	375	397	0.90
Cytoplasmic	398	412	0.79
Transmembrane Helix	413	432	0.85
Non-Cytoplasmic	433	446	0.75
Transmembrane Helix	447	464	0.97
Cytoplasmic	465	481	0.79
Transmembrane Helix	482	502	0.93
Non-Cytoplasmic	503	669	0.96

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKLSFFLLL LLVVFTAQAQ IQEPVKFKTE LKTLSGAEAE IVFTGTIDAG WHVYSTDLGD  60
   61 GGPISATFNV EKMSGAEVVG KLTPRGKEVS DFDKLFEMKV RYFEKTAQFI QKIKFTGSDY 120
  121 SIEGYLEYGA CNDENCLPPT QVPFKFSGKA AATAEVSAKE TPATPVKEPV ATVTDSIVEP 180
  181 TATTVTTAIG SVDLWKPVIN DLKKFGEANS QEDMSWIYIF ITGFLGGLLA LFTPCVWPII 240
  241 PMTVSFFLKR SKDKKKGIRD AWTYGASIVV IYVALGLAIT LIFGASALNA LSTNAVFNIL 300
  301 FCLMLIVFAA SFFGAFELTL PAKWSTAVDS KAEATSGLLS IFLMAFTLSL VSFSCTGPII 360
  361 GFLLVQVSTT GSVVAPAIGM LGFAIALALP FTLFALFPSW LKSMPKSGGW MNVIKVTLGF 420
  421 LELAFALKFL SVADLAYGWR ILDRETFLAL WIVIFALLGF YLLGKIKFPH DDDDTKVSVS 480
  481 RFFMALVSLA FAVYMVPGLW GAPLKAVSAF APPMKTQDFN LYTNEVHAKF DDYDLGMEYA 540
  541 RQHNKPVMLD FTGYGCVNCR KMELAVWTDP KVSSIINNDY VLITLYVDNK TPLTEPVKIM 600
  601 ENGTERTLRT VGDKWSYLQR VKFGANAQPF YVLIDNEGNP LNKSYAYDED ISKYINFLQT 660
  661 GLENYRKEK