YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|56680897, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.65
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	4	0.94
Transmembrane Helix	5	26	0.91
Non-Cytoplasmic	27	40	0.83
Transmembrane Helix	41	63	0.89
Cytoplasmic	64	74	0.74
Transmembrane Helix	75	94	0.91
Non-Cytoplasmic	95	99	0.55
Transmembrane Helix	100	121	0.85
Cytoplasmic	122	132	0.81
Transmembrane Helix	133	154	0.92
Non-Cytoplasmic	155	162	0.79
Transmembrane Helix	163	182	0.95
Cytoplasmic	183	214	0.77
Transmembrane Helix	215	237	0.85
Non-Cytoplasmic	238	247	0.74
Transmembrane Helix	248	268	0.93
Cytoplasmic	269	280	0.70
Transmembrane Helix	281	300	0.79
Non-Cytoplasmic	301	302	0.45
Transmembrane Helix	303	325	0.72
Cytoplasmic	326	338	0.62
Transmembrane Helix	339	361	0.85
Non-Cytoplasmic	362	369	0.61
Transmembrane Helix	370	392	0.90
Cytoplasmic	393	399	0.65

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRLPFLFILA TVMIDAMGIG LIMPIMPDLI VEVKGGTLAD AALWGGVLST AFAAMQFLFG  60
   61 PVIGSLSDAL GRRPVLLVSL FVMALDYVVM ALAGSIWLLL AGRIVGGITA ATHATASAYM 120
  121 ADVSRPEQKA ARFGMLGAAF GVGFVLGPLM GGVLGEFGTR APFWAAAVLA GLNFVLGLFV 180
  181 MNETVTAATR RAFSWASANP LGAFRMLGQV PGLKGLLWAY FLYSVAIYVY PAIWAYFSQE 240
  241 RFGWSSRMIG LSLGIFGFLM AVVQGGLLPH ITRRIGERRT VIWGQLFDFV GFGLLAFIAS 300
  301 GTLALILIPI TAMGAVVPPA LQAIMSRSVA DDQQGALQGV MSAVHALSMI VSPLLMASVF 360
  361 ARFTGPQAPI YLPGAPFLVA LALMAAGLVI FLRTRTAVT