YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|56680851, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLRWFRSPAT ETQITHGQRL WLYVIAVITM ILLVTPTLIV VPMSFSDSQY LEFPPETWST  60
   61 RWYDHYFGSP EWMLATRTSF KAAFLTMLVA TPIGVLAAYG LHSSKIRFVR AAFVLMITPM 120
  121 MVPVVLVAIG AFYAYVQLQI LYTITGLVLA HTVLALPLVV IVTGSALKSF DMSQEEAARS 180
  181 LGAPRWKAFL TVTLPQIRFA VVTSALLSFL TSFDEVVVAM FVSGGDNPTL TRNMFNALRD 240
  241 QIDPTIASIS TIMILVTTGM MVLAQLFGQQ KTKPK

Type	Start	End	Confidence
Cytoplasmic	1	19	0.99
Transmembrane Helix	20	41	0.96
Non-Cytoplasmic	42	81	0.92
Transmembrane Helix	82	101	0.97
Cytoplasmic	102	111	0.83
Transmembrane Helix	112	134	0.93
Non-Cytoplasmic	135	143	0.75
Transmembrane Helix	144	167	0.86
Cytoplasmic	168	187	0.93
Transmembrane Helix	188	211	0.80
Non-Cytoplasmic	212	244	0.87
Transmembrane Helix	245	267	0.92
Cytoplasmic	268	275	0.91