YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|56680850, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.75
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEAVRTNEAG LRRDEWLERL KLFGLGSPAI LLILVILVLP VGWLFYVSFI GADGNFSLEN  60
   61 YERMLKRKSY ARIFQTTFEV SFLTTGLCIL IGYPLAYFIA GLPNRIANLC LITVLLPFWT 120
  121 SLLVRTYAWL VLLQKRGLVN EWAISLGLWD EPIKIVHNMT GTLIGMVHIM LPFLILPVYG 180
  181 AMKAIDRDLM KAASNLGASP RRAFWTVFFP LTLPGLFAGS LMVFILCLGF FVTPAVLGGG 240
  241 KVIMVSMKIV SNIELFVNWG AASALGVVLL VSTMVILWIA SRFLNLEKMT GGGH

Type	Start	End	Confidence
Cytoplasmic	1	20	0.97
Transmembrane Helix	21	46	0.88
Non-Cytoplasmic	47	79	0.92
Transmembrane Helix	80	100	0.92
Cytoplasmic	101	108	0.74
Transmembrane Helix	109	129	0.91
Non-Cytoplasmic	130	161	0.87
Transmembrane Helix	162	182	0.90
Cytoplasmic	183	203	0.89
Transmembrane Helix	204	237	0.82
Non-Cytoplasmic	238	258	0.75
Transmembrane Helix	259	280	0.93
Cytoplasmic	281	294	0.75