YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|56680762, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTDPLDNEEQ SKVRLIHLLP NLLTIAAICA GLTAIRFGYE GNFEMAVRLV LVACVLDGLD  60
   61 GRVARFLNHS TAVGAELDSL ADFVNFGVAP VLILHSWALQ DFSGIGWIAV LFYSICCVLR 120
  121 LARFNVSGRL DPKSAPSDFF VGVPAPAGAL LVLLPLVVSF AVSDMPVAPP AIVALHICVI 180
  181 GILMISRMPT YSFKNMAIDR SNAKFFLLGA TILSAALLTY LWITLTFIIL AYAGCLVWVY 240
  241 RSSRKLKKTK G

Type	Start	End	Confidence
Cytoplasmic	1	16	0.89
Transmembrane Helix	17	37	0.92
Non-Cytoplasmic	38	103	0.51
Transmembrane Helix	104	124	0.90
Cytoplasmic	125	138	0.91
Transmembrane Helix	139	161	0.91
Non-Cytoplasmic	162	166	0.83
Transmembrane Helix	167	188	0.87
Cytoplasmic	189	201	0.82
Transmembrane Helix	202	221	0.85
Non-Cytoplasmic	222	222	0.44
Transmembrane Helix	223	242	0.80
Cytoplasmic	243	251	0.79