YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|56680726, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	27	0.91
Transmembrane Helix	28	49	0.93
Non-Cytoplasmic	50	60	0.68
Transmembrane Helix	61	78	0.89
Cytoplasmic	79	86	0.63
Transmembrane Helix	87	107	0.83
Non-Cytoplasmic	108	112	0.69
Transmembrane Helix	113	133	0.93
Cytoplasmic	134	140	0.83
Transmembrane Helix	141	160	0.94
Non-Cytoplasmic	161	178	0.87
Transmembrane Helix	179	201	0.88
Cytoplasmic	202	229	0.88
Transmembrane Helix	230	250	0.93
Non-Cytoplasmic	251	257	0.71
Transmembrane Helix	258	277	0.92
Cytoplasmic	278	283	0.85
Transmembrane Helix	284	304	0.92
Non-Cytoplasmic	305	313	0.65
Transmembrane Helix	314	331	0.96
Cytoplasmic	332	339	0.89

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQSLESNALE PTKAELKNAS SRTRLLRLLP VYGLVILTAF LILLFSILLP NTFPTILNLR  60
   61 AIISDKAIIA LLSLGAMIPM AAGRIDLTVG YGIVLWHILA ISLQTLYGLP WPIAVALVLA 120
  121 LGLLTGFLNG LLVEVAKIDS FIATLGTGTV LYALALWHTG GRQMVGALPD SFYAINGTFV 180
  181 FGLPITGFYV LGITVAMWLV LEYTPVGRYL YAIGANQRAA QLNGIPTRKF VIGAFMSSGF 240
  241 ITAFAGVLLA SKLRIGQASV GLEFLLPALV GAFLGSTTIK PGRVNVWGTI IGVTILAVGI 300
  301 SGIQQFGGSF WVEPMFNGVT LLIAIGIAGY AQRRKGAKK