YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|56708995, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	5	0.85
Transmembrane Helix	6	25	0.93
Cytoplasmic	26	44	0.89
Transmembrane Helix	45	68	0.87
Non-Cytoplasmic	69	72	0.65
Transmembrane Helix	73	96	0.79
Cytoplasmic	97	103	0.65
Transmembrane Helix	104	122	0.90
Non-Cytoplasmic	123	130	0.75
Transmembrane Helix	131	149	0.92
Cytoplasmic	150	172	0.83
Transmembrane Helix	173	196	0.84
Non-Cytoplasmic	197	204	0.62
Transmembrane Helix	205	229	0.86
Cytoplasmic	230	244	0.81
Transmembrane Helix	245	264	0.90
Non-Cytoplasmic	265	277	0.78
Transmembrane Helix	278	301	0.87
Cytoplasmic	302	560	0.92

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAIFSFLISL AGATMLLLFA VRMVRTGIER AYGSSFQRVM TGNNGVMRAG AVGLVMAVVL  60
   61 QSSAAVALLT SGFAGAGLMG FGQGLAIVLG GDLGSALVIQ ILSYRLDWLV PLLLAVGGWL 120
  121 FVKTEQRKAR QFGRILMGIA FILISLRFLR EAMDPIRDSA FLPAIADYLA RDYVTAFIVG 180
  181 GALAFVMHSS VAAILMCVTL VQIGAIPFSA GLSLVLGANF GSAFIPVWLS RGMTMPARRI 240
  241 PFANLALRGT WAVLCLFAVN LALRNGFAPG PHGGQELVYA HLAFNASLLV LALPFCNLLA 300
  301 APFARLLPDP AQPVDADTLA RPASSLDPAH IGSPAQAVSS LKRELLRMAD LVEAMFRPVL 360
  361 GLYRDGDKTR IKAVQSLDKE VNACLSGIRR YVAALPADQI GREAARSARD MLEYAVRLET 420
  421 AGDVVAGRLC VLAGDLRKTG NQFSKEGWSE LQHMHETILA NMKLASNVLI SDDLESARLL 480
  481 SLEKTELKRA ERSSRKRHFR RLQNGEVQSF DTSDCHLETL RALREFNSHI SAVAYPILYA 540
  541 NGQLLETRLI ETLPATQDED