YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|56708968, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	13	0.86
Transmembrane Helix	14	33	0.94
Non-Cytoplasmic	34	51	0.87
Transmembrane Helix	52	75	0.92
Cytoplasmic	76	84	0.88
Transmembrane Helix	85	109	0.92
Non-Cytoplasmic	110	129	0.81
Transmembrane Helix	130	151	0.95
Cytoplasmic	152	192	0.97
Transmembrane Helix	193	216	0.89
Non-Cytoplasmic	217	230	0.86
Transmembrane Helix	231	253	0.88
Cytoplasmic	254	265	0.90
Transmembrane Helix	266	286	0.93
Non-Cytoplasmic	287	301	0.87
Transmembrane Helix	302	323	0.91
Cytoplasmic	324	331	0.84
Transmembrane Helix	332	353	0.89
Non-Cytoplasmic	354	372	0.90
Transmembrane Helix	373	393	0.95
Cytoplasmic	394	407	0.90
Transmembrane Helix	408	431	0.90
Non-Cytoplasmic	432	447	0.94
Transmembrane Helix	448	469	0.92
Cytoplasmic	470	476	0.96

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTTAHTPQAG AVKLTMILSG AVFALMMIFG LAMRAAQAQW IELDPAIFYQ LLTAHGAGMV  60
   61 GTAALSGAAI LWYFCGRHLT LSAGIFWAFL GLFLLGVVLI LSAIFLGGFG GAWTFLFPLP 120
  121 ANSGGAWGPA AAAAFMLGYT SIGVGFLLYY LELGRRIRAR YGNLTRALGW SLILGKADDD 180
  181 VPPPTIIAAT SVTIFNSIGI VLGAAVLVAS LVHLLVPGFE VNALLAKNLI YFFGHVFINA 240
  241 SIYMAVTAVY EILPEYTGRP WKSNRVFAIA WNVVLIFVMA VYWHHLLQDV VMPPWMLVVG 300
  301 QLVSYFSGIP LIAVTAFSTF LYIRGSKMTW DLASSLLVLS VAGWSIGSIP ASIDGMISVN 360
  361 KVMHNTMWVP GHFHTYLLLG EVAMAFGFMA WLVRGKAISE MVGLDRVAFY TYLAGASGFI 420
  421 LVFLFSGAAS IPRRWAVHYE DWLTHDRIGT AFGALVVMGT LLFVLRFVAR LGRSDG