YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|56680507, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.53
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEGLISLAVK AVFVENLALS FFLGMCTFIA VSKKISTALG LGISVMVVQA ITVPANNLLL  60
   61 NTLLKPGALA WAGFPDVDLT FLGLISYIGV IAAMVQILEM ILDKYFPPLY NALGIFLPLI 120
  121 TVNCAILGGS LFMVERDYNF AEATTYGLSS GFGWALAITA MAGVREKLKY SDVPDGLQGL 180
  181 GITFITAGLM AMAFMSFSGV KL

Type	Start	End	Confidence
Non-Cytoplasmic	1	6	0.53
Transmembrane Helix	7	31	0.79
Cytoplasmic	32	37	0.48
Transmembrane Helix	38	60	0.83
Non-Cytoplasmic	61	78	0.58
Transmembrane Helix	79	98	0.92
Cytoplasmic	99	108	0.52
Transmembrane Helix	109	134	0.85
Non-Cytoplasmic	135	142	0.58
Transmembrane Helix	143	164	0.89
Cytoplasmic	165	175	0.58
Transmembrane Helix	176	198	0.88
Non-Cytoplasmic	199	202	0.54