YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|56680506, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.58
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSQTKKELLI DPLVDNNPIT LQVLGICSAL AVTSSLQVAF VMALAVTFVT AFSSFFISIL  60
   61 RNQIPSSIRI IVQMVIIASL VILVDQILKA YAFEISKTLS VFVGLIITNC IVMGRAEAFA 120
  121 MKNPPVASFI DGFGNGLGYG LILMLVGVIR ELFGSGSLFG VTILQTVNNG GWYVPNGLLL 180
  181 LPPSAFFVIG LLIWAFRTWK PKQIEEREFK IQSVEAH

Type	Start	End	Confidence
Cytoplasmic	1	12	0.61
Transmembrane Helix	13	32	0.58
Non-Cytoplasmic	33	37	0.65
Transmembrane Helix	38	60	0.88
Cytoplasmic	61	69	0.78
Transmembrane Helix	70	88	0.95
Non-Cytoplasmic	89	97	0.65
Transmembrane Helix	98	116	0.91
Cytoplasmic	117	128	0.80
Transmembrane Helix	129	153	0.80
Non-Cytoplasmic	154	177	0.82
Transmembrane Helix	178	197	0.94
Cytoplasmic	198	217	0.95