YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|56708820, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSETQSKGLI ARFLAAPPDS VGKTIFVAVA VCLVASMIVS SAAVALRPVQ EVNKLKDKQM  60
   61 NILQVAGLFE PGQNVAEAFK AFEPQVLELT TGRFTDQFDA ATFDDKAAAN DADLSRALDD 120
  121 DPAGIGRQAL YRTVYLLRDE AGGIDKVILP IHGYGLWSTL YGFIAVEENG NDIFGLQFYQ 180
  181 HGETPGLGAE VDNPRWKAMW NGKKLRDDAG DLQITVAKSQ PAAGADFYVD ALAGATLTSV 240
  241 GVDNLVRFWM GEQGYAPFLE ALKAGEI

Type	Start	End	Confidence
Signal Peptide	1	42	0.54
N-region	1	33
H-region	34	39
C-region	40	42
Cleavage Site	42	43
Non-Cytoplasmic	43	267	0.92