YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|56708801, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.67
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLLAGWYLW QRMMLALGLG AVAALGLAPM SLWLATIGAL LALPALFLAS PGWRQAAWTG  60
   61 WAFATGYFGH ALAWIVEPFL VDVARHGWMA PFALVLMAGG LALFWAAAFA LAAAPARGPE 120
  121 RRVMLLVLTL SLAEMARGYV FTGFPWAGLA QIWVETDAAL LLAWTGPHGL ALATLAAVLP 180
  181 PGVALARGLG GRALLLRCVP ALALGLAILA VDGARVPLEG SGKVVRLVQP NAPQHQKWDP 240
  241 DWYPLFLERQ IRFTAAGTAP DLVVWPESAL PYWLDDAGPV LERIAAAARG TPVLLGANRA 300
  301 EGPRIYNALA LIGAGGRIEA TYDKHHLVPF GEYVPLGDLL EQFGISGFAT RSGRGFSAGP 360
  361 GPVTLAIPGI GAALPLICYE AVFPRDARGT AERPRLLVQA TNDAWFGTWA GPYQHLAQAR 420
  421 MRAIEQGLPM VRVANTGVSA MIDPQGRITA ALALGREGYL DVDLPPALAP TVYGRTGDLP 480
  481 LLVTLLVLLA AAARIQGRNL LPNSD

Type	Start	End	Confidence
Cytoplasmic	1	7	0.67
Transmembrane Helix	8	28	0.81
Non-Cytoplasmic	29	31	0.56
Transmembrane Helix	32	50	0.83
Cytoplasmic	51	56	0.76
Transmembrane Helix	57	76	0.89
Non-Cytoplasmic	77	89	0.75
Transmembrane Helix	90	113	0.89
Cytoplasmic	114	122	0.88
Transmembrane Helix	123	144	0.83
Non-Cytoplasmic	145	163	0.75
Transmembrane Helix	164	185	0.86
Cytoplasmic	186	192	0.81
Transmembrane Helix	193	214	0.81
Non-Cytoplasmic	215	505	0.70