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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|56551550, gi|...
Protein type: Transmembrane
Type Confidence: 0.65
Topology Confidence: 0.62
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNKKPVFYDS SGKRRRRFAL AIVAFFALLF LAIATLFATV AIPSIGQNLP FSIGRAPIKA  60
   61 QPNGITSHTR INFHRALSRI GLVKTPPKPL KDTLSMAFYT PWDDASIASL SRHINDIDWL 120
  121 SPGWLSVTGA DHHWTEFPDP QGHAIINNAK QKPKILPMVQ NVSNGEWDGK NAAILMRDPA 180
  181 ARLQFLNNIE KFLVKNQADG AVFDFESLNK QTLPFYLQLL KETHDRFSAH HWILTVAVPV 240
  241 ADEAWNLSAV ANVSDKLILM AYDEHYPEGE PGAIASNDWF LDVVEQATQN LPPEKVIVAL 300
  301 GSYAYNWKKG SDTDAISIEQ AWLTAHESGT VPVFDKETGN THFSYSEAGI LHNVWMLDAV 360
  361 SFYNQTKMSH HLGFNALALW RLGSEDPSLW NIFGKGHLIH NGANDTAIVA DPVKALSHIP 420
  421 AGTEVDIEGT GEVLRVASRP VAGERQIDLD KEGLITDERF SSIPLPYAIE RAGYRPGMIA 480
  481 LTFDDGPDQK WTPKILDILK KEHAPATFFI IGENALTNRN LLLREIKEGH EVGNHTYTHP 540
  541 NLGMASANST IIEVNATQRL FQAFTGHSLR LFRAPFFGDA EPTTADEIDP VYAAQKLGYL 600
  601 SVGLHVDPND WQRPKKDEII ERVMEQVKQA TSQHSAQIVL LHDSGGDRTQ TIAALPDIIH 660
  661 QLRANGYKLV LVSDLINLKR DDAMPPLSPV ERVSARWNFA LFSCLGASVI ALRWIFAIAI 720
  721 TLGILRALFL SAFSIIQARK ENRLIFPPID PERTISVLIP AFNEEAVIEA SIRRVLASAE 780
  781 VNNIEVIVID DGSTDNSSQI VESQFADDPR VQLIRLSNGG KARALNHGVQ KAKGEIIIAL 840
  841 DADTHFEPRT IARLTRWFSD PKLGAVAGNA KVGNRINLIT RWQALEYITA QNLERRATVL 900
  901 LNAMTVVPGA VGAWRAETLR QVGGFPDQTL AEDQDLTIII QEHDWAVRYD PYAVAWTEAP 960
  961 ETIRALARQR FRWAFGTLQC LWKHWSIIKN RRPKGLAYIG LPQSLIFQIG FATISPIIDL1020
 1021 ALVISIMATV FAVYQHGWVQ QGDDLQKMAA YWSVFTLIDL MSGVVAFALE RKEKWSLLWL1080
 1081 LIPQRIGYRQ IMYYVVIKAL TQAIRGPKVG WDKLERSGHV QTESNK

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle