YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	NHAA2_CAMJR
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.58
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	11	0.88
Transmembrane Helix	12	33	0.84
Non-Cytoplasmic	34	59	0.84
Transmembrane Helix	60	80	0.88
Cytoplasmic	81	92	0.86
Transmembrane Helix	93	114	0.93
Non-Cytoplasmic	115	123	0.77
Transmembrane Helix	124	144	0.88
Cytoplasmic	145	152	0.79
Transmembrane Helix	153	173	0.86
Non-Cytoplasmic	174	177	0.70
Transmembrane Helix	178	199	0.88
Cytoplasmic	200	203	0.56
Transmembrane Helix	204	219	0.75
Non-Cytoplasmic	220	221	0.38
Transmembrane Helix	222	240	0.67
Cytoplasmic	241	253	0.55
Transmembrane Helix	254	273	0.58
Non-Cytoplasmic	274	288	0.76
Transmembrane Helix	289	311	0.87
Cytoplasmic	312	323	0.89
Transmembrane Helix	324	348	0.85
Non-Cytoplasmic	349	360	0.83
Transmembrane Helix	361	381	0.92
Cytoplasmic	382	382	0.97

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQMIKKMVLS ETFPGILLIF FTFLALLCKN SSLSVIYTDF FHANFTVGFD HFQISKSLDL  60
   61 WINDGLIAIF FLCIGLELKY EILRGQLKNI RAVSLPIFGA LGGMITPALI FIAINYAHDF 120
  121 AMKGWAIPTA TDIAFAVGIL MLLGNKIPTS LKLFLLSLAI FDDLGAIVII ALFYTDQLSA 180
  181 LAIIICLFCI FALLLLNYYH ITHLSLYVLV GVVLWIAMLK SGVHATLAGV IISLFIPLDT 240
  241 KNKKPYLHEV LKDLNPWVVY FILPLFAFAN AGIDIRDMHL GSVFSPVSLG IILGLFLGKQ 300
  301 LGVFTFCFIA IKLKLAKLPE NIKYGKFYGI CILTGIGFTM SLFIDGLAYK NSDIFEYADK 360
  361 LAILVASFLS AIVGFIYLKI VK